~jmbr

San Francisco Bay Area, California

https://superadditive.com

Applied mathematician and scientific programmer.

diffusion-maps

Fast computation of diffusion maps and geometric harmonics in Python

latex2anki

Convert decks of flashcards written in LaTeX to Anki

thermodynamic-geometry

Numerical experiments for optimizing free energy perturbation paths via thermodynamic geometry

cookiecutter-jax-project

Template for JAX projects using Cookiecutter

make-project

Boilerplate generator for Common Lisp projects

Activity

aa2eef6 Improve code quality in procrustes module and add unit test.

17 hours ago via diffusion-maps

0b8a169 Improve code quality in procrustes module and add unit test.

17 hours ago via diffusion-maps

1016fea Uniformize source code with Black.

~jmbr pushed to ~jmbr/latex2anki git

a day ago via latex2anki

47e779c Write procrustes modules to implement RMSD in a reliable way.

a day ago via diffusion-maps

7df6079 Rewrite using CuPy. Replace geometric harmonics by GP regression.

3 days ago via diffusion-maps

492c231 Uniformize imports from jaxtyping module.

3 days ago via diffusion-maps

12caf8d Remove development dependency on Jupyter.

3 days ago via diffusion-maps

5fa1460 Focus exclusively on CuPy. Drop JAX.

3 days ago via diffusion-maps

4ab3e7c Optionally return covariance of GP.

3 days ago via diffusion-maps

98d090c Add specific unit test for Gaussian process regression.

3 days ago via diffusion-maps

a163016 Re-enable CUDA.

3 days ago via diffusion-maps

ca113e6 Minor fixes.

4 days ago via diffusion-maps

f463268 Re-enable CUDA in the computation of diffusion maps.

4 days ago via diffusion-maps

317423d Remove redundant pre-commit hook.

5 days ago via diffusion-maps

cdd3e6b Use correct, known eigenvector as initial guess.

5 days ago via diffusion-maps
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