San Francisco Bay Area, California
Applied mathematician and scientific programmer.
Fast computation of diffusion maps and geometric harmonics in Python
Convert decks of flashcards written in LaTeX to Anki
Numerical experiments for optimizing free energy perturbation paths via thermodynamic geometry
Template for JAX projects using Cookiecutter
Boilerplate generator for Common Lisp projects
aa2eef6 Improve code quality in procrustes module and add unit test.
~jmbr pushed to ~jmbr/diffusion-maps git
0b8a169 Improve code quality in procrustes module and add unit test.
~jmbr pushed to ~jmbr/diffusion-maps git
1016fea Uniformize source code with Black.
~jmbr pushed to ~jmbr/latex2anki git
47e779c Write procrustes modules to implement RMSD in a reliable way.
~jmbr pushed to ~jmbr/diffusion-maps git
7df6079 Rewrite using CuPy. Replace geometric harmonics by GP regression.
~jmbr pushed to ~jmbr/diffusion-maps git
492c231 Uniformize imports from jaxtyping module.
~jmbr pushed to ~jmbr/diffusion-maps git
12caf8d Remove development dependency on Jupyter.
~jmbr pushed to ~jmbr/diffusion-maps git
5fa1460 Focus exclusively on CuPy. Drop JAX.
~jmbr pushed to ~jmbr/diffusion-maps git
4ab3e7c Optionally return covariance of GP.
~jmbr pushed to ~jmbr/diffusion-maps git
98d090c Add specific unit test for Gaussian process regression.
~jmbr pushed to ~jmbr/diffusion-maps git
f463268 Re-enable CUDA in the computation of diffusion maps.
~jmbr pushed to ~jmbr/diffusion-maps git
317423d Remove redundant pre-commit hook.
~jmbr pushed to ~jmbr/diffusion-maps git
cdd3e6b Use correct, known eigenvector as initial guess.
~jmbr pushed to ~jmbr/diffusion-maps git